When you export using whitespace stripping, Spine warns you that it may ruin meshes:
(it is also mentioned in the user guide Meshes - Spine User Guide: Whitespace stripping and the FAQ Support: Why are meshes not displaying correctly )
We have two related issues for this: Whitespacing trimming for meshes · #260 · EsotericSoftware/spine-editor and Prompt for user decision when mesh images are resized · #205 · EsotericSoftware/spine-editor
Unfortunately, none of them are implemented or close to implementation.
This is also why it is recommended to use the Photoshop to Spine script spine-scripts/photoshop at master · EsotericSoftware/spine-scripts as it will automatically trim all the images before they are even imported in Spine, avoiding the need to trim any whitespace at all.